GMS 6140 – Principles of Immunology

Spring 2019

Mon/Wed/Fri, 10:40-11:30 a.m., room R2-265, Academic Research Building (ARB)
Tue, 9:35-11:30 a.m., room 1101, Health Professions, Nursing & Pharmacy (HPNP) Building

Course Director:  Wayne T. McCormack, PhD (e-mail mccormac at;  phone 294-8334;  office CG-72K)

Schedule for Spring 2019:        CANVAS SITE

DATE                TOPIC

Mon, Jan 7        Course Overview, Immunology History
Tue, Jan 8         TBL:  Basic Concepts in Immunology
Wed, Jan 9        Basic Principles of Immunity
Fri, Jan 11         Ig Structure/Function and Ag-Ab Interactions
Mon, Jan 14      Generation of Receptor Diversity
Tue, Jan 15       TBL:  Receptor Diversity
Wed, Jan 16      Lymphoid Tissues and Organs
Fri, Jan 18         The Innate Immune System
Mon, Jan 21      No Class – MLK Holiday
Tue, Jan 22       No Class
Wed, Jan 23      Complement
Fri, Jan 25         Cells of the Innate Immune System
Mon, Jan 28      Pattern Recognition by Innate Immunity
Tue, Jan 29       TBL:  Innate Immunity
Wed, Jan 30      NK and ILC Development 1
Fri, Feb 1          Introduction to Immunogenetics & MHC
Mon, Feb 4       T Lymphocyte Receptors
Tue, Feb 5         No Class
Wed, Feb 6       The MHC and its Proteins
Fri, Feb 8          Antigen Processing and Presentation
Mon, Feb 11     Evolution of the Immune System
Tue, Feb 12      TBL:  Ag Processing/Presentation
Wed, Feb 13     No Class
Wed, Feb 13     Exam 1 (7:00-10:00 pm, room C1-3)

Fri, Feb 15        T Signaling Mechanisms
Mon, Feb 18     B Cell Receptors, Signaling, & Activation
Tue, Feb 19      No Class
Wed, Feb 20     B Lymphocyte Development
Fri, Feb 22        B Lymphocyte Responses
Mon, Feb 25     Somatic Diversification of Ab Responses
Tue, Feb 26      TBL:  Humoral Immunity
Wed, Feb 27     Dendritic Cells
Fri, Mar 1         T Lymphocyte Development
Mar 4-8            No Classes – Spring Break
Mon, Mar 11     T Cell-Mediated Immunity 1
Tue, Mar 12      Appl:  T Cell-Mediated Immunity 1
Wed, Mar 13     T Cell-Mediated Immunity 2
Fri, Mar 15        CD8 T Cell Responses
Mon, Mar 18     Integration of Innate & Adaptive Immunity
Tue, Mar 19      TBL:  T Cell-Mediated Immunity 2
Wed, Mar 20     TNF & IFN Cytokines
Fri, Mar 22        Immune Tolerance & Reg/Suppressor T Cells
Mon, Mar 25     Immunological Memory
Tue, Mar 26      Paper Discussion:  Immunological Memory
Thu, Mar 28      Exam 2 (7:00-10:00 pm, room C1-3)

Wed, Mar 27     Inborn Errors of Immunity
Fri, Mar 29        Evasion & Subversion of Immune Defenses
Mon, Apr 1       Immunology of HIV Infection
Tue, Apr 2        TBL:  Immunodeficiencies
Wed, Apr 3       Autoimmunity 1
Fri, Apr 5          Autoimmunity 2
Mon, Apr 8       Autoimmunity 3
Tue, Apr 9        TBL:  Autoimmunity
Wed, Apr 10     Allergy & Allergic Diseases
Fri, Apr 12        Treatment of Unwanted Immune Responses
Mon, Apr 15     Vaccines
Tue, Apr 16      Lecture: Manipulation of Immune Responses
Wed, Apr 17     Transplantation Immunology
Fri, Apr 19        Mucosal Immunity 1
Mon, Apr 22     Mucosal Immunity 2
Tue, Apr 23      Paper Discussion:  Mucosal Immunology
Wed, Apr 24     Cancer Immunology
Mon, Apr 29     Exam 3 (9:00 am – 12:00 noon, room C1-3)

Catalog Description

Fundamental principles of basic and experimental immunology, from first engagement of innate immunity to the generation of the adaptive immune response and its clinical consequences. (4 credits)

Course Overview

This course focuses on fundamental principles of basic and experimental immunology, from first engagement of innate immunity to the generation of the adaptive immune response and its clinical consequences. It is required as a core course for PhD students in the Immunology & Microbiology concentration of the biomedical sciences PhD program. This course is open to other UF graduate students with consent of the course director. Weekly small group sessions (Tuesdays) will provide students with experience in problem-solving, application of immunology principles in an experimental context, and integration of immunology & microbiology, via team-based learning and/or paper discussions.

Course Objectives

Successful will be expected to accomplish the following learning objectives.

1. Attain a working knowledge of current immunological principles related to:
    a. cell surface molecules and receptors on cells of the immune system;
b. how immune cells develop and acquire the ability to recognize antigens;
c. how immune cells interact in order to defend the body against microbes, including both innate and adaptive immunity;
d. how immune cells malfunction in autoimmunity and immunodeficiency; and
e. how the immune system may be manipulated to improve health.

2. Be able to read and discuss research papers from the current research literature in order to become familiar with experimental protocols, and develop skills in interpreting immunological data, critique of experimental designs, and formulation of new hypotheses.

3. Interpret immunological data.

4. Design immunological experiments to test a given hypothesis.

Course Material

Handouts, PowerPoint presentations, and other course material will be posted at an Canvas web site (login with Gatorlink ID and password).  All registered students will automatically be enrolled at the site during the first week of classes.

The following textbook is REQUIRED for Spring 2019:

“Janeway’s Immunobiology” by Kenneth Murphy & Casey Weaver, Garland Science, 9th Edition


(Note:  the book “Case Studies in Immunology – A Clinical Companion” was required in 2018, but will NOT be required in 2019)


Preparation for Team-Based Learning (TBL) Sessions

Teams will be set up at the beginning of the semester, and will work together throughout the semester.  Your assignment before each TBL session is to review the assigned reading, lecture presentation, and your notes relevant to the topic of that session.

Session schedule:
9:35 am – Individual Readiness Assurance Test
9:50 am – Team Readiness Assurance Test
10:05 am – Team Application Exercise – Team discussion of case studies and questions, followed by class discussion
11:30 am – Adjourn
Readiness Assurance Tests will consist of up to 10 multiple-choice questions (closed book) based on the material you have studied for that session.  Individual Readiness Assurance Tests will be completed individually, and answers will be collected using an answer sheet that is provided.  Team Readiness Assurance Tests (closed book) will consist of the same questions as the Individual Readiness Assurance Test, and team answers will be recorded on scratch-off cards that will be provided.  It is important to arrive on time!  You will not be given extra time for the individual test if you are late.


The final course grade will be based on an average of three exams (75%) and your average scores on the TBL readiness assurance test (25%)Final  grade cut-offs will be based on the final class score distribution. They will be set no higher than the following, and may be adjusted lower depending on the final score distribution.  Final % score A 90%-100%; A- 85%-89%; B+ 80%-84%; B 75%-79%; B- 70%-74%; C+ 65%-69%; C 60%-64%; C- 55%-59%.  Letter grades will affect student grade point averages according to UF grading policies.

Academic Honesty

Students are expected to act in accordance with the University of Florida policy on academic integrity (see Student Conduct Code, the Graduate Student Handbook or these web sites for more details:

Cheating, lying, misrepresentation, or plagiarism in any form is unacceptable and inexcusable behavior, and will result in a score of zero for the assignment and reporting to the UF Dean of Students Office.  We, the members of the University of Florida community, pledge to hold ourselves and our peers to the highest standards of honesty and integrity.

Class Attendance

Students are expected to read all assignments prior to class, and to be prepared to attend and participate in all sessions. Personal issues with respect to class attendance or participation will be handled on an individual basis.

Exam or Other Work Make-up

Make-up assignments will be provided for excused absences from paper discussions and team-based learning sessions, and must be completed by mutually agreed upon dates. Alternate dates will be arranged for exams with excused absences or extenuating circumstances (e.g., child care issues in the evening).

Accommodations for Students with Disabilities

Students with disabilities requesting accommodations should first register with the Disability Resource Center (352-392-8565, by providing appropriate documentation. Once registered, students will receive an accommodation letter which must be presented to the instructor when requesting accommodations. Students with disabilities should follow this procedure as early as possible in the semester.

Counseling and Student Health

Students may occasionally have personal issues that arise in the course of pursuing higher education or that may interfere with their academic performance. If you find yourself facing problems affecting your coursework, you are encouraged to talk with an instructor and to seek confidential assistance at the UF Counseling & Wellness Center, 352-392-1575. Visit their web site for more information: (, see also link therein for Emergency Assistance). Crisis intervention is always available 24/7 from the Alachua County Crisis Center at (352) 264-6789. Do not wait until you reach a crisis to come in and talk with us. We have helped many students through stressful situations impacting their academic performance. You are not alone, so do not be afraid to ask for assistance.